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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "HydraR" in publications use:'
type: software
license: LGPL-3.0-or-later
title: 'HydraR: Stateful Agentic Orchestration for Scientific Reproducibility'
version: 0.2.4
doi: 10.5281/zenodo.19446742
identifiers:
- type: doi
  value: 10.32614/CRAN.package.HydraR
abstract: A high-performance framework for orchestrating complex agentic workflows
  in R, specifically designed for scientific reproducibility and auditability. HydraR
  provides a robust, state-managed engine for Directed Acyclic Graphs (DAGs) and iterative
  state machines, prioritizing CLI-native LLM interactions (e.g., Gemini, Claude,
  Copilot) and hardened state persistence (DuckDB/SQLite). It features isolated execution
  via Git Worktrees for parallel file-modifying tasks, autonomous quality control
  through integrated auditors, and human-readable visualization using Mermaid.js.
  Ideal for creating auditable, resumable research assistants and complex bioinformatics
  pipelines.
authors:
- family-names: Pang
  given-names: Chi Nam Ignatius
  email: ignatius.pang@mq.edu.au
  orcid: https://orcid.org/0000-0001-9703-5741
- family-names: Tay
  given-names: Aidan
  orcid: https://orcid.org/0000-0003-1315-4896
preferred-citation:
  type: manual
  title: 'HydraR: Stateful Agentic Orchestration for Scientific Reproducibility'
  authors:
  - family-names: Pang
    given-names: Chi Nam Ignatius
    email: ignatius.pang@mq.edu.au
    orcid: https://orcid.org/0000-0001-9703-5741
  - family-names: Tay
    given-names: Aidan
    orcid: https://orcid.org/0000-0003-1315-4896
  year: '2026'
  notes: R package version 0.2.0.9000
  url: https://github.com/APAF-bioinformatics/HydraR
  doi: 10.5281/zenodo.19446742
repository: https://ropensci-staging.r-universe.dev
repository-code: https://github.com/APAF-bioinformatics/HydraR
commit: ceb3c632cd464cf6ea6c5c6b078d713b47af5ca0
url: https://APAF-bioinformatics.github.io/HydraR/
date-released: '2026-04-23'
contact:
- family-names: Pang
  given-names: Chi Nam Ignatius
  email: ignatius.pang@mq.edu.au
  orcid: https://orcid.org/0000-0001-9703-5741