Package: taxastand 2.0.0.9000

Joel Nitta

taxastand: Taxonomic Name Standardization

Standardizes taxonomic names by matching species names to entries in a user-supplied reference taxonomy, then resolving synonyms to their accepted names. Fuzzy matching on parsed name components (genus, epithet, author, infraspecific rank, etc.) allows for orthographic differences between the query and reference names. This facilitates reproducible joining of datasets that use different taxonomic synonyms for the same species.

Authors:Joel Nitta [aut, cre, cph]

taxastand_2.0.0.9000.tar.gz
taxastand_2.0.0.9000.zip(r-4.7-any)taxastand_2.0.0.9000.zip(r-4.6-any)taxastand_2.0.0.9000.zip(r-4.5-any)
taxastand_2.0.0.9000.tgz(r-4.6-any)taxastand_2.0.0.9000.tgz(r-4.5-any)
taxastand_2.0.0.9000.tar.gz(r-4.7-any)taxastand_2.0.0.9000.tar.gz(r-4.6-any)
taxastand_2.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
taxastand/json (API)

# Install 'taxastand' in R:
install.packages('taxastand', repos = c('https://ropensci-staging.r-universe.dev', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #()

Bug tracker:https://github.com/joelnitta/taxastand/issues

Pkgdown/docs site:https://joelnitta.github.io

Datasets:

On CRAN:

Conda:

databasetaxonomy

4.81 score 23 stars 14 scripts 4 exports 23 dependencies

Last updated from:cafb25f01a. Checks:10 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develOK139
pkgdown docsOK158
source / vignettesOK165
linux-releaseOK131
macos-releaseOK87
macos-oldrelOK90
windows-develOK82
windows-releaseOK97
windows-oldrelOK85
wasm-releaseOK114

Exports:%>%ts_match_namests_parse_namests_resolve_names

Dependencies:assertthatclicpp11digestdplyrfsgenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr

The basics
Setup | Name parsing | Name matching | Name resolution
Rendered frombasics.Rmdusingknitr::rmarkdown

Last update: 2026-07-25
Started: 2021-10-15

Benchmark: pure R vs. taxon-tools
Background | Setup | Parsing | Matching | Takeaways
Rendered frombenchmark.Rmdusingknitr::rmarkdown

Last update: 2026-07-25
Started: 2026-07-18