Package: GeoPressureR 3.6.3

Raphaël Nussbaumer

GeoPressureR: Global Positioning by Atmospheric Pressure

R package to determine the position and trajectory of a bird based on light-weight data-logger measuring at lease atmospheric pressure.

Authors:Raphaël Nussbaumer [aut, cre, cph], Mathieu Gravey [aut]

GeoPressureR_3.6.3.tar.gz
GeoPressureR_3.6.3.zip(r-4.7-any)GeoPressureR_3.6.3.zip(r-4.6-any)GeoPressureR_3.6.3.zip(r-4.5-any)
GeoPressureR_3.6.3.tgz(r-4.6-any)GeoPressureR_3.6.3.tgz(r-4.5-any)
GeoPressureR_3.6.3.tar.gz(r-4.7-any)GeoPressureR_3.6.3.tar.gz(r-4.6-any)
GeoPressureR_3.6.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GeoPressureR/json (API)

# Install 'GeoPressureR' in R:
install.packages('GeoPressureR', repos = c('https://ropensci-staging.r-universe.dev', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #()

Bug tracker:https://github.com/geopressure/geopressurer/issues

Pkgdown/docs site:https://geopressure.org

On CRAN:

Conda:

birddataloggerera5geolocatormigrationpressure-sensorwindspeed

5.58 score 9 stars 217 scripts 83 exports 105 dependencies

Last updated from:baa54ec5fe. Checks:2 ERROR, 8 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develERROR564
pkgdown docsERROR207
source / vignettesOK268
linux-releaseOK527
macos-releaseOK487
macos-oldrelOK464
windows-develOK545
windows-releaseOK712
windows-oldrelOK704
wasm-releaseOK168

Exports:bird_createedge_add_windfind_stapgeolight_calibrategeolight_fit_locationgeolight_mapgeolight_map_aggregategeolight_map_calibrategeolight_map_likelihoodgeolight_solargeolightvizgeopressure_mapgeopressure_map_likelihoodgeopressure_map_mismatchgeopressure_map_preprocessgeopressure_timeseriesgeopressure_timeseries_apigeopressure_timeseries_arcogeopressuretemplategeopressuretemplate_configgeopressuretemplate_graphgeopressuretemplate_pressurepathgeopressuretemplate_taggeopressurevizgraph_add_windgraph_assertgraph_creategraph_marginalgraph_most_likelygraph_set_movementgraph_simulationhaversine_distanceload_interimmap_add_mask_watermap_add_tilesmap_createmap_expandmap_typeparam_createpath2edgepath2elevationpath2twilightplot_graph_movementplot_pathplot_pressurepathplot_tag_accelerationplot_tag_actogramplot_tag_lightplot_tag_pressureplot_tag_temperatureplot_tag_twilightplot_twl_calibpressurepath_createpressurepath_create_apipressurepath_create_arcopressurepath_variable_availablerast.mapread_stapspeed2bearingspeed2probstap2durationstap2flighttag_asserttag_createtag_download_windtag_labeltag_label_autotag_label_readtag_label_staptag_label_writetag_prepare_likelihoodtag_set_maptag_stap_dailytag_statustag2likelihoodtag2pathtime2plottimetrainsetts2mattwilight_createtwilight_label_readtwilight_label_writewindsupport

Dependencies:abindaskpassassertthatbase64encBiocGenericsbitopsbslibcachemclassclassIntclicodetoolsconfigcpp11crosstalkcurldata.tableDBIdigestdplyre1071EBImageevaluatefarverfastmapfftwtoolsfilelockfontawesomefsfuturefuture.applygenericsggplot2globalsgluegtablehighrhtmltoolshtmlwidgetshttrhttr2isobandjpegjquerylibjsonliteKernSmoothkeyringknitrlabelinglaterlatticelazyevalleafletleaflet.providerslifecyclelistenvlocfitmagrittrMatrixmemoisemimeopensslotelparallellypillarpkgconfigplotlypngpracmaprogressrpromisesproxypurrrR6rappdirsrasterRColorBrewerRcppRCurlrlangrmarkdowns2S7sassscalessfspstringistringrsuntoolssysterratibbletidyrtidyselecttifftinytexunitsutf8vctrsviridisLitewithrwkxfunyaml

Readme and manuals

Help Manual

Help pageTopics
Create bird flight traitsbird_create
Retrieve ERA5 variable along edgeedge_add_wind
Estimate one location per stationary period from twilight timesgeolight_fit_location
Compute likelihood map from twilightgeolight_map geolight_map_aggregate geolight_map_calibrate geolight_map_likelihood
Solar zenith angle using NOAA / Meeus equationsgeolight_solar
Start the GeoLightViz Shiny appgeolightviz
Compute likelihood map from pressure datageopressure_map geopressure_map_likelihood geopressure_map_mismatch
Prepare pressure data for 'geopressure_map()'geopressure_map_preprocess
Retrieve an ERA5 pressure time seriesgeopressure_timeseries geopressure_timeseries_api geopressure_timeseries_arco
GeoPressureR: Global positioning by atmospheric pressure.GeoPressureR
Workflow for GeoPressureRgeopressuretemplate geopressuretemplate_config geopressuretemplate_graph geopressuretemplate_pressurepath geopressuretemplate_tag
Start the GeoPressureViz shiny appgeopressureviz
Compute windspeed and airspeed on a 'graph'graph_add_wind
Assert the status of a 'graph'graph_assert
Create a 'graph' objectgraph_create
Compute marginal probability mapgraph_marginal
Compute the most likely trajectorygraph_most_likely
Define the movement model of a 'graph'graph_set_movement
Simulate randomly multiple trajectoriesgraph_simulation
Load interim objects from an RData fileload_interim
Create water mask for geolight mapmap_add_mask_water
Create a 'map' objectmap_create
Construct grid from 'extent' and 'scale'map_expand
Create a 'param' listparam_create
Extract the edges of a 'path' from a 'graph'path2edge
Download ground elevation along a pathpath2elevation
Compute exact astronomical twilights from a 'path' (positions and dates)path2twilight
Plot movement model of a 'graph'plot_graph_movement
Plot a 'path'plot_path
Plot a 'pressurepath'plot_pressurepath
Plot acceleration data of a 'tag'plot_tag_acceleration
Plot Actogram data of a 'tag'plot_tag_actogram
Plot light data of a 'tag'plot_tag_light
Plot pressure data of a 'tag'plot_tag_pressure
Plot temperature data of a 'tag'plot_tag_temperature
Plot twilight data of a 'tag'plot_tag_twilight
Plot twilight calibration diagnosticsplot_twl_calib plot_twl_calib_path
Plot a 'map' objectplot.map
Plot a 'tag' objectplot.tag
Create a pressure pathpressurepath_create pressurepath_create_api pressurepath_create_arco
List the ERA5 variables a backend and product can returnpressurepath_variable_available
Print a 'bird' objectprint.bird
Print a 'graph' objectprint.graph
Print a 'map' objectprint.map
Print a 'param' listprint.param
Print a 'tag' objectprint.tag
Construct a SpatRaster from a 'map'rast.map
Read or validate stap dataread_stap
Compute the bearing of a speed vectorspeed2bearing
Compute probability of a bird speedspeed2prob
Compute duration of stationary periodsstap2duration
Compute flights from stationary periodsstap2flight
Assert the status of a 'tag'tag_assert
Create a 'tag' objecttag_create
Download flight datatag_download_wind
Label a 'tag' objecttag_label
Automatic labelling acceleration data of a 'tag'tag_label_auto
Read a tag label filetag_label_read
Create stationary periods from a tag labeltag_label_stap
Write a tag label filetag_label_write
Configure the spatial and temporal parameters of the 'map' of a 'tag' objecttag_set_map
Create stationary periods from twilight midpointstag_stap_daily
Build a 'path' from the likelihood maps of a 'tag'tag2path
Start the GeoPressure Trainset shiny apptrainset
Format time series data frame into a matrixts2mat
Estimate twilights from light datatwilight_create
Read a twilight label filetwilight_label_read
Write a twilight label filetwilight_label_write
Compute wind support and drift from a wind and ground speed vectorswindsupport